Biological Small-Angle Neutron Scattering Workshop
NOTE: Changed to green so we know it's not been updated! (jlc)
Day 1: September 7, 2022
Teams Link: Click here to join the meeting
Schedule (EST) | Activity | Lead |
09:00–09:15 am | Introductions | Hugh O’Neill/ Wellington Leite |
09:15–09:30 am | Center for Structural Molecular Biology Overview | Hugh O’Neill |
09:30–10:15 am | Introduction to Small-Angle Neutron Scattering | Volker Urban |
10:15–10:25 am | Virtual tour of Bio-SANS | Luke Heroux |
10:25–10:40 am | Bio-SANS Sample Environments | Luke Heroux |
10:40–11:00 am | Break | |
11:00–11:30 am | Bio-deuteration | Kevin Weiss |
11:30–12:00 pm | Virtual tour of Biology Laboratories | Kevin Weiss/Qiu |
12:00–1:00 pm | Lunch | |
1:00–1:45 pm | Sample Preparation and Experiment Planning | Wellington Leite /Manjula Senanayake Mudiyanselage |
1:4–2:30 pm | Experiment Set-up and Data Acquisition | Sai Venkatesh Pingali |
2:30–2:45 pm | Break | |
2:45–04:00 pm | Attendee Lightning Talks | Wellington Leite |
Day 2: September 8, 2022
Session 1 Teams Link: Click here to join the meeting
Session 2 Teams Link: Click here to join the meeting
Schedule (EST) | Activity | Lead |
09:00–09:45 am | Breakout Session 1: Data analysis for solution scattering of biomacromolecular complexes Breakout Session 2: Data analysis for hierarchical biosystems | Wellington Leite
Sai Venkatesh Pingali |
09:45–10:00 am | Break | |
10:00–12:00 pm | Hands-on Session 1 Hands-on Session 2 | Wellington Leite Sai Venkatesh Pingali |
Software required for Session 1
| Software | Source | Application |
| ATSAS | EMBL | Program suite for small-angle scattering data analysis from biological macromolecules - https://www.embl-hamburg.de/biosaxs/software.html |
| RAW | BioXTAS | Program for analysis of Small-Angle X-ray Scattering (SAXS) data - https://bioxtas-raw.readthedocs.io/en/latest/api.html |
| Pymol | Schrödinger | Molecular visualization system - https://pymol.org/2/ |
| Chimera | UCSF | Interactive visualization and analysis of molecular structures - https://www.cgl.ucsf.edu/chimera/ |
Software required for Session 2
| Software | Source | Application |
| Irena | Igor Pro* | Irena package for analysis of small-angle scattering data |
| SASView | SASView 5+ | SASView for small-angle scattering analysis - https://www.sasview.org |
A free demonstration version of Igor Pro is available at [https://www.wavemetrics.com/downloads/current/Igor%20Pro%209]]. This should be installed prior to installing the Irena package.
